BioKit¶
note: | BioKit is tested with Travis for the following Python version: 2.7, 3.5, 3.6 |
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contributions: | Please join https://github.com/biokit/biokit |
issues: | Please use https://github.com/biokit/biokit/issues |
Overview¶
BioKit is a set of tools dedicated to bioinformatics, data visualisation (biokit.viz
),
access to online biological data (e.g. UniProt, NCBI thanks to bioservices). It also contains
more advanced tools related to data analysis (e.g., biokit.stats
). Since R is quite common in bioinformatics, we also provide a convenient module to run R inside your Python
scripts or shell (:mod:biokit.rtools module).
In order to install biokit, you can use pip:
pip install biokit
Or using bioconda channel from the Anaconda project:
conda install biokit
Overview¶
biokit.network |
Utilities related to networks (e.g., protein) |
biokit.viz |
Plotting tools |
biokit.rtools |
utilities related to R language (e.g., RPackageManager, RSession) |
biokit.sequence |
Sequence related (Generic, DNA, RNA) |
biokit.stats |
Generic statistical tools |